STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
agaZPutative tagatose 6-phosphate kinase protein. (451 aa)    
Predicted Functional Partners:
scrK
Probable fructokinase protein.
 
     0.940
dgoAa
Putative 2-dehydro-3-deoxyphosphogalactonate aldolase protein.
     
  0.900
eda
Probable bifunctional alkh protein (khg/kdpg aldolase): 4-hydroxy-2-oxoglutarate aldolase and 2-dehydro-3-deoxyphosphogluconate aldolase.
     
  0.800
sorD
Probable sorbitol dehydrogenase (l-iditol 2-dehydrogenase) oxidoreductase protein.
       0.773
RSc2144
Probable sugar-binding periplasmic signal peptide protein.
       0.615
RSc0982
Probable transmembrane protein.
  
     0.581
glpR
Probable glycerol-3-phosphate regulon repressor transcription regulator protein.
    
 0.552
RSc2141
Putative had-superfamily hydrolase subfamily ia transmembrane protein.
 
     0.505
RSc2142
Probable transmembrane abc transporter protein.
       0.463
RSc2143
Probable transmembrane abc transporter protein.
       0.440
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.