STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sorDProbable sorbitol dehydrogenase (l-iditol 2-dehydrogenase) oxidoreductase protein. (256 aa)    
Predicted Functional Partners:
RSc2144
Probable sugar-binding periplasmic signal peptide protein.
 
    0.831
scrK
Probable fructokinase protein.
  
   0.793
agaZ
Putative tagatose 6-phosphate kinase protein.
  
    0.775
RSp0697
Probable dehydrogenase/reductase oxidoreductase protein.
  
     0.767
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.681
RSc2142
Probable transmembrane abc transporter protein.
 
     0.673
RSc2143
Probable transmembrane abc transporter protein.
 
     0.652
RSp1422
Putative peptide synthetase protein.
 
 
 0.623
dalD
Putative d-arabinitol 4-dehydrogenase. oxidoreductase protein; Belongs to the mannitol dehydrogenase family.
  
 0.545
RSp0230
Putative 3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase oxidoreductase protein.
  
     0.511
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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