STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2148Hypothetical peptidoglycan-binding lysm protein. (160 aa)    
Predicted Functional Partners:
RSc1924
Probable phage-related protein (baseplate assembly-like protein).
  
 
 0.867
RSc0859
Probable bacteriophage-related protein.
  
 
 0.834
RSc1918
Probable phage-related protein (tail sheath-like protein).
  
 
 0.834
RSc1922
Probable tail-related protein (tail formation-like protein).
  
 
 0.829
RSc1912
Probable phage-related protein.
  
   0.788
RSc0753
Probable transmembrane protein.
   
  
 0.702
pilQ
Probable fimbrial type-4 assembly signal peptide protein.
 
 
 
 0.671
RSc2303
Probable type II secretory pathway, gspd-related protein.
   
 
 0.626
RSp0143
Putative gspd-related protein.
   
 
 0.626
RSc0404
Hypothetical signal peptide protein.
   
    0.618
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.