STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2158Putative protein phosphatase 2c-like. (304 aa)    
Predicted Functional Partners:
RSp0216
Putative type III effector protein (serine/threonine-protein kinase).
 
 
 0.963
RSc2157
Putative serine/threonine protein kinase.
 
 
 0.954
lpdA
Probable dihydrolipoamide dehydrogenase (e3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) protein.
  
 0.951
RSc1798
Putative pyruvate decarboxylase e1 (beta subunit) oxidoreductase protein.
   
 0.788
RSc1062
Probable transmembrane protein.
 
     0.761
RSc1259
Putative signal peptide protein.
  
     0.745
RSc0400
Putative gtpase (dynamin-related) harboring a t-snare domain protein.
  
     0.735
RSc3104
Probable calcium-binding signal peptide protein.
    
 0.735
RSc1986
Probable type iv pilus assembly fimv-related transmembrane protein.
  
     0.734
RSc2453
Probable cog0144, trna and rrna cytosine-c5-methylase protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
 
 0.729
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.