close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2203Putative glycosyl transferase, family 2;peptidase m protein. (306 aa)    
Predicted Functional Partners:
waaL
Probable lipopolysaccharide o-antigen ligase transmembrane protein.
 
  
 0.900
epsB
Putative tyrosine-protein kinase epsb (eps ipolysaccharide export epsb). transmembrane; Probably involved in polymerization and/or export of exopolysaccharide EPS I which functions as a virulence factor. May be involved in an ATP-dependent process in the pathway for EPS I production, possibly export of the trimeric repeat units across the inner membrane or their polymerization (By similarity).
  
  
 0.543
RSc2297
Hypothetical signal peptide protein.
  
     0.542
dnaE1
Probable dna polymerase III (alpha chain) protein.
       0.522
RSp1004
Probable dtdp-glucose 4,6-dehydratase transmembrane protein.
  
  
 0.496
RSc2298
Putative multicopper oxidase, type 3; signal peptide protein.
  
     0.474
RSp0803
Putative hemagglutinin-related signal peptide protein.
  
     0.452
RSc0071
Probable transmembrane protein.
 
   
 0.439
RSc3162
Probable hemagglutinin-related autotransporter protein.
  
     0.437
RSp1008
Probable glycosyl transferase transmembrane protein.
  
  
 0.430
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.