STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc2203Putative glycosyl transferase, family 2;peptidase m protein. (306 aa)    
Predicted Functional Partners:
waaL
Probable lipopolysaccharide o-antigen ligase transmembrane protein.
 
  
 0.897
RSc2297
Hypothetical signal peptide protein.
  
     0.542
epsB
Putative tyrosine-protein kinase epsb (eps ipolysaccharide export epsb). transmembrane; Probably involved in polymerization and/or export of exopolysaccharide EPS I which functions as a virulence factor. May be involved in an ATP-dependent process in the pathway for EPS I production, possibly export of the trimeric repeat units across the inner membrane or their polymerization (By similarity).
  
  
 0.531
dnaE1
Probable dna polymerase III (alpha chain) protein.
       0.522
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.510
RSc2298
Putative multicopper oxidase, type 3; signal peptide protein.
  
     0.474
RSp0803
Putative hemagglutinin-related signal peptide protein.
  
     0.452
RSc0071
Probable transmembrane protein.
 
   
 0.438
RSc3162
Probable hemagglutinin-related autotransporter protein.
  
     0.437
RSp1008
Probable glycosyl transferase transmembrane protein.
  
  
 0.434
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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