STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2212Putative beta-lactamase-like protein. (279 aa)    
Predicted Functional Partners:
RSc0777
Putative hemerythrin-like protein; Oxygen-binding protein. May be involved in a storage mechanism or for delivery to oxygen-requiring enzymes. The oxygen- binding site contains two iron atoms; Belongs to the hemerythrin family.
 
  
 0.756
hemN
Probable oxygen-independent coproporphyrinogen III oxidase oxidoreductase protein; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.737
RSp0967
Putative lipoprotein cog4273, uncharacterized conserved protein.
  
    0.611
RSc2967
Probable outer membrane w-related protein signal peptide.
   
    0.532
ompW
Putative outer membrane w signal peptide protein.
   
    0.532
RSp1220
Probable flavoprotein fad oxidoreductase.
  
  
 0.532
nirB
Probable nitrite reductase nadph (large subunit) oxidoreductase protein; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
  
 0.532
rhlE2
Probable atp-dependent rna helicase protein; Belongs to the DEAD box helicase family.
       0.483
RSc1312
Probable protein of unknown function duf47.
   
    0.451
RSc3398
Probable flavohemoprotein (hemoglobin-like) transmembrane; Belongs to the globin family.
  
  
 0.423
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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