STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2225Probable transmembrane protein. (324 aa)    
Predicted Functional Partners:
sseA
Probable thiosulfate sulfurtransferase protein.
       0.722
RSp0133
Probable transmembrane protein.
  
     0.711
RSc2224
Putative bacterial ring hydroxylating dioxygenase, alpha subunit; EC_number 1.14.1.-.
 
     0.619
folE2
Conserved hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
    0.525
amiC
Probable n-acetylmuramoyl-l-alanine amidase amic precursor protein.
   
    0.420
xseB
Probable exodeoxyribonuclease vII small subunit (exonuclease vII small subunit) protein; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
    0.406
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.