STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RSc2227Putative predicted divalent heavy-metal cations transporter transmembrane protein. (268 aa)    
Predicted Functional Partners:
sodB
Probable superoxide dismutase [fe] protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
 
  
 0.645
RSc2228
Putative dienelactone hydrolase;twin-arginine translocation pathway signal protein.
  
  
 0.576
polA
Probable dna polymeraseIprotein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.556
RSc2778
Putative tonb-related transmembrane protein.
 
   
 0.517
RSp0257
Putative siderophore-interacting protein.
   
    0.517
ndh
NADH:ubiquinone reductase (H+-translocating); Probable nadh dehydrogenase, membrane flavoprotein fad nad ubiquinone electron transport oxidoreductase.
 
     0.510
RSc2771
Putative pseudogene (cation efflux protein c-terminal fragment).
   
 0.456
RSc2772
Putative metal transport transmembrane protein.
   
 0.456
RSp0319
Probable metal-transporting p-type atpase transmembrane protein.
 
   
 0.441
fumC
Probable fumarate hydratase class II (fumarase c) protein; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
  
    0.436
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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