STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2227Putative predicted divalent heavy-metal cations transporter transmembrane protein. (268 aa)    
Predicted Functional Partners:
sodB
Probable superoxide dismutase [fe] protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
 
  
 0.630
RSc2228
Putative dienelactone hydrolase;twin-arginine translocation pathway signal protein.
  
    0.557
ndh
NADH:ubiquinone reductase (H+-translocating); Probable nadh dehydrogenase, membrane flavoprotein fad nad ubiquinone electron transport oxidoreductase.
 
     0.514
RSc2778
Putative tonb-related transmembrane protein.
 
   
 0.510
RSp0257
Putative siderophore-interacting protein.
   
    0.499
RSc3077
Probable cation efflux; transmembrane protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
     
 0.464
fumC
Probable fumarate hydratase class II (fumarase c) protein; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
  
    0.460
RSp0319
Probable metal-transporting p-type atpase transmembrane protein.
 
   
 0.449
RSc0995
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
   
 0.429
polA
Probable dna polymeraseIprotein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.423
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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