STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pobBProbable 4-hydroxybenzoate 3-monooxygenase oxidoreductase protein. (410 aa)    
Predicted Functional Partners:
pcaH
Probable protocatechuate 3,4-dioxygenase (beta chain) oxidoreductase protein.
 
  
 0.994
pcaG
Probable protocatechuate 3,4-dioxygenase (alpha chain) oxidoreductase protein.
 
  
 0.981
RSc1827
Probable thioesterase protein.
     
  0.900
RSp0038
Probable thioesterase protein.
     
  0.900
pcaQ
Probable transcriptional regulatory dna-binding transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
   
 0.802
pcaC
Putative 4-carboxymuconolactone decarboxylase protein.
 
   
 0.792
pcaI
Probable 3-oxoadipate coa-transferase subunit a protein.
     
 0.777
pcaB
Probable 3-carboxy-cis,cis-muconate cycloisomerase protein.
 
   
 0.773
pcaJ
Probable 3-oxoadipate coa-transferase subunit b protein.
     
 0.771
RSp1400
Probable 4-hydroxyphenylpyruvate dioxygenase-related protein.
 
  
 0.731
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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