STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaCPutative 4-carboxymuconolactone decarboxylase protein. (131 aa)    
Predicted Functional Partners:
pcaD
Probable b-ketoadipate enol-lactone hydrolase transmembrane protein.
 
 0.999
pcaB
Probable 3-carboxy-cis,cis-muconate cycloisomerase protein.
 
 
 0.998
pcaD2
Probable b-ketoadipate enol-lactone hydrolase protein.
 
 0.994
RSc0631
Probable transmembrane protein.
 
  
  0.973
RSp1472
Probable 4-carboxymuconolactone decarboxylase protein.
 
  
 
0.914
pcaH
Probable protocatechuate 3,4-dioxygenase (beta chain) oxidoreductase protein.
 
  
 0.905
pcaG
Probable protocatechuate 3,4-dioxygenase (alpha chain) oxidoreductase protein.
 
  
 0.861
pobB
Probable 4-hydroxybenzoate 3-monooxygenase oxidoreductase protein.
 
   
 0.792
RSc1141
Putative rna-binding protein, yrdc; Belongs to the SUA5 family.
      
 0.733
pcaI
Probable 3-oxoadipate coa-transferase subunit a protein.
  
  
 0.729
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.