STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaJProbable 3-oxoadipate coa-transferase subunit b protein. (220 aa)    
Predicted Functional Partners:
pcaI
Probable 3-oxoadipate coa-transferase subunit a protein.
 0.999
lpsI
Probable fesuccinyl-coa:3-ketoacid-coenzyme a transferase subunit a protein.
 
 0.997
pacF
Probable beta-ketoadipyl coa thiolase protein; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.976
pcaD
Probable b-ketoadipate enol-lactone hydrolase transmembrane protein.
  
 
 0.963
RSc0475
Putative acetyl-coa acyltransferase protein; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.921
pcaD2
Probable b-ketoadipate enol-lactone hydrolase protein.
   
 
 0.904
pobB
Probable 4-hydroxybenzoate 3-monooxygenase oxidoreductase protein.
     
 0.771
pcaB
Probable 3-carboxy-cis,cis-muconate cycloisomerase protein.
 
  
 0.762
pcaH
Probable protocatechuate 3,4-dioxygenase (beta chain) oxidoreductase protein.
  
  
 0.743
pcaQ
Probable transcriptional regulatory dna-binding transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
      
 0.731
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.