STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2256Putative signal peptide protein. (171 aa)    
Predicted Functional Partners:
RSp0176
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
   
 
 0.663
hrpW
Hrpw transmembrane protein.
   
 
 0.663
RSc2158
Putative protein phosphatase 2c-like.
  
 
 0.567
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.492
scrA
Probable pts system, sucrose-specific (IIbc component) transmembrane protein.
   
 
 0.482
RSp0254
Probable signal transduction eal-ggdef domains transmembrane protein.
  
  
 0.470
RSc2255
Probable transcription regulator protein.
       0.456
RSc3079
Probable composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein.
    
 
 0.411
RSp1676
Probable composite two-component regulatory (sensor kinase and response regulator hybrid) transcription regulator protein.
    
 
 0.411
RSc1006
Probable ferredoxin [4fe-4s] protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
    0.406
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.