STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ragGProbable polysaccharide synthase transmembrane protein. (456 aa)    
Predicted Functional Partners:
ragC
Probable outer membrane lipoprotein.
 
   
 0.962
ragF
Probable glycosyl-transfrase protein.
 
   
 0.956
ragA
Probable polysaccharide transport system component signal peptide protein.
 
   
 0.929
ragD
Probable polysaccharide transport system component transmembrane protein.
     
 0.842
ragE
Probable polysaccharide transport system component transmembrane protein.
     
 0.841
RSc3137
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
   
 0.817
ragB
Probable polysaccharide transport system component signal peptide protein.
     
 0.719
phcS
Transmembrane sensor histidine kinase transcription regulator protein.
  
     0.509
phcB
Regulatory protein.
  
     0.482
RSc2269
Hypothetical signal peptide protein.
       0.471
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.