STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ragAProbable polysaccharide transport system component signal peptide protein. (948 aa)    
Predicted Functional Partners:
ragC
Probable outer membrane lipoprotein.
 
   
 0.930
ragG
Probable polysaccharide synthase transmembrane protein.
 
   
 0.929
ragF
Probable glycosyl-transfrase protein.
 
   
 0.922
ragB
Probable polysaccharide transport system component signal peptide protein.
  
  
 0.835
ragD
Probable polysaccharide transport system component transmembrane protein.
     
 0.700
ragE
Probable polysaccharide transport system component transmembrane protein.
     
 0.697
RSc2734
Probable response regulator transcription regulator protein.
  
     0.606
addB
Probable homologous recombinational repair protein.
  
     0.576
phcB
Regulatory protein.
  
     0.562
RSc2655
Probable transmembrane protein.
  
     0.538
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.