STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2292Putative transmembrane protein. (207 aa)    
Predicted Functional Partners:
RSc2291
Putative transglycosylase signal peptide protein.
       0.718
RSc2297
Hypothetical signal peptide protein.
 
   
 0.708
RSp0988
Probable transmembrane protein.
  
     0.698
RSc2299
Putative multicopper oxidase, type 2; signal peptide protein.
 
   
 0.608
ctaG
Probable cytochrome c oxidase assembly transmembrane protein.
  
 0.600
ctaA
Putative heme o oxygenase (cytochrome aa3-controlling) transmembrane protein.
  
 0.600
RSc2298
Putative multicopper oxidase, type 3; signal peptide protein.
 
   
 0.600
coxB
Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 0.599
coxM
Probable cytochrome c oxidase polypeptide II (cytochrome bb3 subunit 2) transmembrane protein.
 
 0.595
RSp0563
Putative thiol-disulfide isomerase or thioredoxin protein.
 
   
 0.554
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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