STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2300Putative cog2165, type II secretory pathway, pseudopilin pulg-related signal peptide protein. (164 aa)    
Predicted Functional Partners:
RSc2303
Probable type II secretory pathway, gspd-related protein.
 
   
 0.908
RSc2302
Probable cog2165, type II secretory pathway, pseudopilin pulg-related signal peptide protein.
 
     0.907
RSc2301
Probable cog2165, type II secretory pathway, pseudopilin pulg-related protein.
 
     0.887
RSc2308
Probable type II secretory pathway gspe-related protein.
 
 
 0.808
RSp0474
Putative general secretion pathway gspd-related protein; Belongs to the bacterial secretin family.
 
  
 0.797
RSp0143
Putative gspd-related protein.
 
   
 0.789
RSp0142
Putative general secretion pathway gspg related transmembrane protein.
 
     0.786
RSp0471
Putative general secretion pathway gspg-related transmembrane protein.
 
     0.786
RSc2309
Probable type II secretory pathway, gspf-related transmembrane protein.
 
  
 0.785
RSp0141
Putative general secretion pathway gspg related transmembrane protein.
 
     0.784
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.