STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc2302Probable cog2165, type II secretory pathway, pseudopilin pulg-related signal peptide protein. (172 aa)    
Predicted Functional Partners:
RSc2303
Probable type II secretory pathway, gspd-related protein.
 
  
 0.951
RSc2301
Probable cog2165, type II secretory pathway, pseudopilin pulg-related protein.
 
     0.944
RSc2300
Putative cog2165, type II secretory pathway, pseudopilin pulg-related signal peptide protein.
 
     0.907
RSc2308
Probable type II secretory pathway gspe-related protein.
 
 
 0.895
RSc2309
Probable type II secretory pathway, gspf-related transmembrane protein.
 
  
 0.880
RSp0143
Putative gspd-related protein.
 
  
 0.796
RSp0474
Putative general secretion pathway gspd-related protein; Belongs to the bacterial secretin family.
 
  
 0.793
RSp0140
Probable cog2165, type II secretory pathway, pseudopilin transmembrane protein.
 
     0.786
RSc2304
Putative proline rich transmembrane protein.
       0.781
RSp0469
Probable transmembrane protein.
  
     0.775
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.