STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2306Probable transmembrane protein. (176 aa)    
Predicted Functional Partners:
RSc2305
Probable transmembrane protein.
  
    0.784
RSc2308
Probable type II secretory pathway gspe-related protein.
       0.779
RSc2309
Probable type II secretory pathway, gspf-related transmembrane protein.
       0.779
RSc2307
Probable signal peptide protein.
       0.773
RSc2303
Probable type II secretory pathway, gspd-related protein.
       0.756
RSc2304
Putative proline rich transmembrane protein.
       0.756
RSc2301
Probable cog2165, type II secretory pathway, pseudopilin pulg-related protein.
       0.755
RSc2302
Probable cog2165, type II secretory pathway, pseudopilin pulg-related signal peptide protein.
       0.755
RSc2310
Probable type II secretory pathway, pseudopilin pulg-related transmembrane protein.
       0.616
RSc2300
Putative cog2165, type II secretory pathway, pseudopilin pulg-related signal peptide protein.
       0.583
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.