STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2308Probable type II secretory pathway gspe-related protein. (567 aa)    
Predicted Functional Partners:
RSc2309
Probable type II secretory pathway, gspf-related transmembrane protein.
 
 
 0.976
RSc2301
Probable cog2165, type II secretory pathway, pseudopilin pulg-related protein.
 
 
 0.924
RSc2303
Probable type II secretory pathway, gspd-related protein.
 
 
 
 0.922
pilC
Probable fimbrial assembly transmembrane protein.
 
 
 0.902
gspF
Probable general secretory pathway f transmembrane protein.
 
 
 0.902
RSp0149
Probable general secretion pathway gspf-related transmembrane protein.
 
 
 0.902
RSp0467
Putative general secretion pathway gspf-related transmembrane protein.
 
 
 0.901
RSc2302
Probable cog2165, type II secretory pathway, pseudopilin pulg-related signal peptide protein.
 
 
 0.895
pilD
Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.851
RSc2305
Probable transmembrane protein.
  
 
 0.830
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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