STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Cooccurrence
Coexpression
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[Homology]
Score
RSc2365Putative orn/lys/arg decarboxylase, c-terminal;chey-like; protein. (759 aa)    
Predicted Functional Partners:
RSc0158
Probable arginase protein; Belongs to the arginase family.
   
 0.917
speB
Probable agmatinase protein; Belongs to the arginase family.
    
 0.916
argH
Probable argininosuccinate lyase (arginosuccinase) (asal) protein.
     
 0.833
brg11
Probable avrbs3 family type III effector protein; Exported into plant cells, where it is targeted to the nucleus and probably acts as a transcription factor. Binds DNA in a sequence-specific manner. May contribute to plant pathogenicity. Belongs to the transcription activator-like effector (TALE) family. RipTAL/RTL subfamily.
      
 0.830
RSp0109
Probable atpase protein.
   
 
 0.750
RSc1070
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.743
efp
Probable elongation factor p (ef-p) protein; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
 
   
 0.698
dcd
Probable deoxycytidine triphosphate deaminase (dctp deaminase) protein; Catalyzes the deamination of dCTP to dUTP.
       0.692
ripG
Type III effector protein gala6.
      
 0.550
ripB
Type III effector ripb protein.
      
 0.508
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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