STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2365Putative orn/lys/arg decarboxylase, c-terminal;chey-like; protein. (759 aa)    
Predicted Functional Partners:
speB
Probable agmatinase protein; Belongs to the arginase family.
    
 0.958
RSc0158
Probable arginase protein; Belongs to the arginase family.
   
 0.918
argH
Probable argininosuccinate lyase (arginosuccinase) (asal) protein.
     
 0.826
RSc1070
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.743
RSp0109
Probable atpase protein.
   
 
 0.691
efp
Probable elongation factor p (ef-p) protein; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
 
   
 0.688
dcd
Probable deoxycytidine triphosphate deaminase (dctp deaminase) protein; Catalyzes the deamination of dCTP to dUTP.
       0.648
aspC
Probable aspartate aminotransferase protein.
      
 0.641
aatA1
Probable aspartate aminotransferase a protein.
      
 0.641
brg11
Probable avrbs3 family type III effector protein; Exported into plant cells, where it is targeted to the nucleus and probably acts as a transcription factor. Binds DNA in a sequence-specific manner. May contribute to plant pathogenicity. Belongs to the transcription activator-like effector (TALE) family. RipTAL/RTL subfamily.
      
 0.540
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.