STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc2380Probable bacterial outer membrane transmembrane protein. (209 aa)    
Predicted Functional Partners:
flgE
Probable flagellar hook protein flge.
   
 
 0.540
flgC
Probable flagellar basal-body rod protein flgc; Belongs to the flagella basal body rod proteins family.
   
   0.526
RSc1413
Probable outer membrane chaperone, skp-related transmembrane protein; Belongs to the skp family.
  
 
 0.501
mrp
Probable mrp atpase involved in chromosome partitioning protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
     
 0.497
RSc2378
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.490
RSc2377
Proline rich protein.
       0.457
tolB
Probable protein tolb precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.454
flgG
Probable flagellar basal-body rod protein flgg (distal rod protein).
   
   0.452
RSc2291
Putative transglycosylase signal peptide protein.
  
     0.446
RSc1117
Probable lipoprotein releasing system transmembrane.
  
 
 
 0.432
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.