STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc2418Conserved hypothetical protein; Miscellaneous; hypothetical/global homology. (123 aa)    
Predicted Functional Partners:
cbiL
Probable precorrin-2 c20-methyltransferase protein; Methylates precorrin-2 at the C-20 position to produce precorrin-3A.
 
  
 0.926
RSc2416
Putative permease transmembrane protein.
  
    0.864
RSc2417
Putative permease transmembrane protein.
  
    0.858
pepA
Probable cytosol aminopeptidase (leucine aminopeptidase)(lap) (leucyl aminopeptidase) protein; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
       0.682
holC
Probable dna polymerase III (chi subunit) protein.
       0.626
nirE
Putative uroporphyrinogen-III c-methyltransferase protein; Belongs to the precorrin methyltransferase family.
 
  
 0.624
cbiJH
Probable bifunctional: precorrin-3 methyltransferase and precorrin-6x reductase oxidoreductase protein.
     
 0.591
cysD
Putative sulfate adenylyltransferase subunit 2 protein.
 
  
 0.507
narH
Probable respiratory nitrate reductase oxidoreductase protein.
  
    0.495
RSc2413
Miscellaneous; hypothetical/partial homology.
       0.491
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.