STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hpaFPutative 5-carboxymethyl-2-hydroxymuconate delta-isomerase protein. (134 aa)    
Predicted Functional Partners:
nagK
Putative isomerase-decarboxylase homolog protein.
  
  
 0.849
hmgB
Probable fumarylacetoacetase (fumarylacetoacetate hydrolase) protein.
  
  
 0.811
RSc1592
Probable transcription regulator protein.
 
   
 0.788
hpaI1
Putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase oxidoreductase protein; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.766
hpaI2
Probable 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase protein; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.752
RSp0892
Putative hydratase/decarboxylase; protein.
 
  
 0.724
RSp0891
Putative hydratase/decarboxylase; protein.
 
  
 0.710
RSp0423
Putative hpch/hpai aldolase; protein; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.578
RSp0899
Probable hydratase/decarboxylase; protein.
 
  
 0.551
nagI
Probable gentisate 1,2-dioxygenase oxidoreductase protein.
  
   
 0.547
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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