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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2429Hypothetical oxidoreductase protein. (298 aa)    
Predicted Functional Partners:
RSc2428
Probable amino acid-binding periplasmic (pbp) abc transporter protein.
       0.741
fbaA
Probable fructose-bisphosphate aldolase protein; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.
 
    0.611
cysB2
Putative cys regulon transcriptional activator-related transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
       0.606
gcl
Probable glyoxylate carboligase protein; Belongs to the TPP enzyme family.
 
  
 0.559
hyi
Probable hydroxypyruvate isomerase protein; Belongs to the hyi family.
  
 0.487
pcaC
Putative 4-carboxymuconolactone decarboxylase protein.
 
  
 0.477
RSc0631
Probable transmembrane protein.
  
  
 0.437
RSp1472
Probable 4-carboxymuconolactone decarboxylase protein.
  
  
 0.437
RSc0020
Putative hydroxypyruvate isomerase / xylose isomerase-like tim barrel; protein; Belongs to the hyi family.
  
 0.432
RSc2426
Putative of unknown function duf81 transmembrane protein.
       0.427
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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