STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmBProbable 50s ribosomal protein l28; Belongs to the bacterial ribosomal protein bL28 family. (77 aa)    
Predicted Functional Partners:
rpmG
Probable 50s ribosomal protein l33; Belongs to the bacterial ribosomal protein bL33 family.
 
 
 0.999
rpsN
Probable 30s ribosomal protein s14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.; Belongs to the universal ribosomal protein uS14 family.
 
 
 0.995
rpsF
Probable 30s ribosomal protein s6; Binds together with S18 to 16S ribosomal RNA.
 
 
 0.992
rpsR
Probable 30s ribosomal protein s18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit.; Belongs to the bacterial ribosomal protein bS18 family.
 
 
 0.992
rpmF
Probable 550s ribosomal protein l32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.991
rpmE
Probable 50s ribosomal protein l31 type b.
 
 
 0.991
rpsO
Probable 30s ribosomal subunit protein s15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 
 0.990
rpsT
Probable 30s ribosomal protein s20; Binds directly to 16S ribosomal RNA.
  
 
 0.990
rplU
Probable 50s ribosomal subunit protein l21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.990
rpsU
Probable 30s ribosomal protein s21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.989
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.