STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
RSc2450Putative stearoyl-coa desaturase oxidoreductase protein. (398 aa)    
Predicted Functional Partners:
RSp0792
Putative fatty acid desaturase transmembrane protein.
  
  
 
0.918
RSc0566
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.699
RSp0641
Probable non ribosomal peptide synthetase protein.
   
 0.623
coq7
Probable ipr011566 ubiquinone biosynthesis and related protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
  
 
   0.600
RSc1806
Probable polyketide synthase protein.
   
 0.544
RSc1001
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.535
RSc1810
Probable polyketide synthase protein.
   
 
 0.508
sdhC
Putative transmembrane succinate dehydrogenase (cytochrome b-556 subunit) oxidoreductase protein.
  
     0.502
RSc2453
Probable cog0144, trna and rrna cytosine-c5-methylase protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
   0.486
nadC
Probable nicotinate-nucleotide pyrophosphorylase (carboxylating) quinolinate phosphoribosyltransferase (decarboxylating) protein; Belongs to the NadC/ModD family.
       0.457
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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