STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2450Putative stearoyl-coa desaturase oxidoreductase protein. (398 aa)    
Predicted Functional Partners:
RSp0792
Putative fatty acid desaturase transmembrane protein.
  
  
 
0.918
RSc0566
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.699
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.654
RSc1806
Probable polyketide synthase protein.
   
 
 0.647
RSc1810
Probable polyketide synthase protein.
   
 
 0.643
coq7
Probable ipr011566 ubiquinone biosynthesis and related protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
  
     0.566
RSc1001
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.535
sdhC
Putative transmembrane succinate dehydrogenase (cytochrome b-556 subunit) oxidoreductase protein.
  
     0.502
nadC
Probable nicotinate-nucleotide pyrophosphorylase (carboxylating) quinolinate phosphoribosyltransferase (decarboxylating) protein; Belongs to the NadC/ModD family.
       0.457
nadA
Probable quinolinate synthetase a protein; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate; Belongs to the quinolinate synthase A family. Type 1 subfamily.
       0.457
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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