STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2452Putative phospholipase d/transphosphatidylase; protein. (189 aa)    
Predicted Functional Partners:
RSc0744
Putative dna/rna non-specific endonuclease protein.
      
 0.796
RSc2453
Probable cog0144, trna and rrna cytosine-c5-methylase protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
       0.786
RSc2451
Putative small-conductance mechanosensitive channel transmembrane protein.
       0.769
gspM
Probable general secretory pathway m transmembrane protein.
      
 0.576
purN
Probable phosphoribosylglycinamide formyltransferase protein; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
       0.530
RSc3027
Probable signal peptide protein.
   
    0.518
RSc3030
Hypothetical precursor. signal peptide protein; Protects the bacterial cell from host peptidases.
   
    0.502
RSc0835
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
 
 0.428
RSc3235
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
 
 0.425
RSp1522
Probable transmembrane protein.
  
  
 0.414
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.