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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2497Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family. (321 aa)    
Predicted Functional Partners:
RSc2498
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
 
     0.868
RSc0160
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.772
RSc1196
Probable dna-binding transcriptional regulatory transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.759
pcaQ
Probable transcriptional regulatory dna-binding transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.757
RSp0823
Probable transcriptional regulator transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.757
RSp1237
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.736
RSp1593
Probable transcription regulator transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.735
RSp1267
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.729
RSp0308
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.728
RSp0912
Probable transcriptional regulator transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.723
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.