STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2504Probable short-chain dehydrogenase/reductase sdr; oxidoreductase protein. (248 aa)    
Predicted Functional Partners:
RSp0935
Probable oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    0.692
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.681
RSp1422
Putative peptide synthetase protein.
 
 
 0.623
RSc2321
Probable short-chain dehydrogenase/reductase sdr; oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.579
RSc0284
Putative short-chain dehydrogenase/reductase sdr oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.572
RSc2505
Putative transcription regulator protein.
  
    0.528
ogt
Probable methylated-dna--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
       0.524
RSc1806
Probable polyketide synthase protein.
  
 
 0.421
fruK
Probable 1-phosphofructokinase protein; Belongs to the carbohydrate kinase PfkB family.
   
    0.420
katE
Probable catalase hydroperoxidase hpII oxidoreductase protein; Belongs to the catalase family.
  
 0.403
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.