STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2516Osmoprotectant transport system permease protein; Putative abc type transporter : periplasmic glycine betaine / choline-binding lipoprotein and permease components transmembrane. (520 aa)    
Predicted Functional Partners:
opuC
Putative glycine betaine transmembrane and periplasmic abc transporter protein.
 
 0.817
RSc2515
Putative metal-dependent phosphohydrolase, hd region; protein.
       0.773
opuA
Putative glycine betaine/l-proline atp-binding abc transporter protein.
  
 0.762
RSc3139
Putative transcription regulator protein.
 
  
 0.583
RSc0950
Hypothetical h^pothetical protein.
 
     0.565
RSc2517
Conserved hypothetical transmembrane protein.
       0.565
RSc0339
Probable transmembrane protein.
 
    0.532
RSc1295
Probable transcription regulator protein.
 
  
 0.532
RSp0067
Probable transmembrane abc transporter protein.
 
  
0.516
lpdA
Probable dihydrolipoamide dehydrogenase (e3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) protein.
  
  
 0.507
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.