STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc2516Osmoprotectant transport system permease protein; Putative abc type transporter : periplasmic glycine betaine / choline-binding lipoprotein and permease components transmembrane. (520 aa)    
Predicted Functional Partners:
opuC
Putative glycine betaine transmembrane and periplasmic abc transporter protein.
 
 
 0.816
opuA
Putative glycine betaine/l-proline atp-binding abc transporter protein.
 
  
 0.813
RSc2515
Putative metal-dependent phosphohydrolase, hd region; protein.
       0.773
RSp0067
Probable transmembrane abc transporter protein.
 
 
0.685
RSc0950
Hypothetical h^pothetical protein.
 
     0.649
RSc0339
Probable transmembrane protein.
 
    0.571
RSc2517
Conserved hypothetical transmembrane protein.
       0.565
potA
Probable atp-binding abc transporter protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
  
 
 0.562
RSc1794
Probable atp-binding abc transporter protein; Belongs to the ABC transporter superfamily.
  
 
 0.562
msrB
Probable peptide methionine sulfoxide reductase related protein; Belongs to the MsrB Met sulfoxide reductase family.
 
  
 0.560
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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