STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc2542Putative lipoprotein transmembrane. (216 aa)    
Predicted Functional Partners:
RSc2543
Probable methylated-dna--protein-cysteine methyltransferase.
       0.641
RSc2545
Hypothetical ybak/prolyl-trna synthetase associated region; protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.626
xerD
Probable integrase/recombinase protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.623
RSc1062
Probable transmembrane protein.
  
    0.545
RSc1986
Probable type iv pilus assembly fimv-related transmembrane protein.
  
     0.507
plsY
Hypothetical membrane transmembrane protein; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.
       0.501
RSp0660
Probable porin protein.
  
    0.480
RSc3285
Probable abc-type branched-chain amino acid transport systems, periplasmic component signal peptide protein.
  
     0.468
RSc0950
Hypothetical h^pothetical protein.
 
  
 0.458
hrcT
Hrp conserved hrct transmembrane protein.
   
    0.438
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.