Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpsTProbable 30s ribosomal protein s20; Binds directly to 16S ribosomal RNA. (88 aa)    
Predicted Functional Partners:
rplU
Probable 50s ribosomal subunit protein l21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.996
rpsB
Probable 30s ribosomal protein s2; Belongs to the universal ribosomal protein uS2 family.
  
 
 0.992
rpsU
Probable 30s ribosomal protein s21; Belongs to the bacterial ribosomal protein bS21 family.
 
 
 0.991
rpsI
Probable 30s ribosomal protein s9; Belongs to the universal ribosomal protein uS9 family.
 
 
 0.991
rpsO
Probable 30s ribosomal subunit protein s15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 
 0.991
rplM
Probable 50s ribosomal protein l13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.990
rpmB
Probable 50s ribosomal protein l28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.990
rpsP
Probable 30s ribosomal protein s16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.989
rpmF
Probable 550s ribosomal protein l32; Belongs to the bacterial ribosomal protein bL32 family.
   
 
 0.989
rpmE
Probable 50s ribosomal protein l31 type b.
  
 
 0.989
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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