STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkBProbable alkylated dna repair protein. (218 aa)    
Predicted Functional Partners:
ada
Probable ada regulatory of adaptative response contains: methylated-dna--protein-cysteine methyltransferase ec 2.1.1.63 o-6-methylguanine-dna transcription regulator.
  
 0.918
RSc2567
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.895
RSc2566
Putative methylated-dna--protein-cysteine methyltransferase.
  
 0.888
alkA
Probable dna-3-methyladenine glycosylase protein.
     
 0.820
RSc2571
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
  
 0.675
recQ
Probable atp-dependent dna helicase protein.
   
 
 0.601
ruvA
Probable holliday junction dna helicase ruva protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
   
  
 0.594
RSc0174
Probable ketopantoate reductase apba/pane; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
   
    0.586
RSc3361
Probable ketopantoate reductase oxidoreductase protein.
   
    0.586
RSp1244
Putative ketopantoate reductase oxidoreductase protein; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
   
    0.586
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.