STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2579Putative lipoprotein. (108 aa)    
Predicted Functional Partners:
trbJ
Probable conjugal transfer trbj signal peptide protein.
      0.928
trbE
Probable conjugal transfer protein trbe.
   
 
 0.853
trbL
Putative conjugal transfer trbl transmembrane protein.
       0.799
traG
Probable plasmid conjugation trag transmembrane protein.
     
 0.792
trbI
Probable conjugal transfer trbi transmembrane protein.
   
 
 0.789
trbD
Probable conjugal transfer trbd transmembrane protein.
       0.774
trbC
Probable conjugal transfer trbc transmembrane protein.
       0.774
RSc2585
Hypothetical ribbon-helix-helix harboring protein.
       0.774
trbB
Probable conjugal transfer protein trbb.
     
 0.758
trbG
Probable conjugal transfer lipoprotein trbg.
     
 0.738
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.