Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
traGProbable plasmid conjugation trag transmembrane protein. (675 aa)    
Predicted Functional Partners:
RSc2585
Hypothetical ribbon-helix-helix harboring protein.
     0.994
trbB
Probable conjugal transfer protein trbb.
   
 0.993
trbG
Probable conjugal transfer lipoprotein trbg.
   
 0.979
trbC
Probable conjugal transfer trbc transmembrane protein.
 
   
 0.977
trbI
Probable conjugal transfer trbi transmembrane protein.
 
 
 
 0.976
RSc2574
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
   
 0.969
trbE
Probable conjugal transfer protein trbe.
 
  
 0.965
trbJ
Probable conjugal transfer trbj signal peptide protein.
 
   
 0.962
trbD
Probable conjugal transfer trbd transmembrane protein.
 
     0.961
trbL
Putative conjugal transfer trbl transmembrane protein.
 
   
 0.956
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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