STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traGProbable plasmid conjugation trag transmembrane protein. (675 aa)    
Predicted Functional Partners:
trbB
Probable conjugal transfer protein trbb.
   
 0.994
RSc2585
Hypothetical ribbon-helix-helix harboring protein.
     0.993
trbI
Probable conjugal transfer trbi transmembrane protein.
 
 
 
 0.978
trbG
Probable conjugal transfer lipoprotein trbg.
   
 0.978
trbC
Probable conjugal transfer trbc transmembrane protein.
 
   
 0.975
trbE
Probable conjugal transfer protein trbe.
  
 0.968
RSc2574
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
   
 0.965
trbJ
Probable conjugal transfer trbj signal peptide protein.
 
   
 0.959
trbD
Probable conjugal transfer trbd transmembrane protein.
 
     0.954
trbL
Putative conjugal transfer trbl transmembrane protein.
 
   
 0.953
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.