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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2587Putative lipoprotein. (87 aa)    
Predicted Functional Partners:
traR
Probable plasmid replication regulatory trar transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
       0.773
trbD
Probable conjugal transfer trbd transmembrane protein.
       0.512
trbC
Probable conjugal transfer trbc transmembrane protein.
       0.512
RSc2585
Hypothetical ribbon-helix-helix harboring protein.
       0.512
traG
Probable plasmid conjugation trag transmembrane protein.
       0.510
trbJ
Probable conjugal transfer trbj signal peptide protein.
       0.504
trbL
Putative conjugal transfer trbl transmembrane protein.
       0.498
trbE
Probable conjugal transfer protein trbe.
       0.497
RSc2579
Putative lipoprotein.
      
0.476
limA
Probable limonene-1,2-epoxide hydrolase protein.
       0.471
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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