STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc2587Putative lipoprotein. (87 aa)    
Predicted Functional Partners:
traR
Probable plasmid replication regulatory trar transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
       0.773
trbC
Probable conjugal transfer trbc transmembrane protein.
       0.507
RSc2585
Hypothetical ribbon-helix-helix harboring protein.
       0.507
trbD
Probable conjugal transfer trbd transmembrane protein.
       0.506
traG
Probable plasmid conjugation trag transmembrane protein.
       0.505
trbJ
Probable conjugal transfer trbj signal peptide protein.
       0.499
trbL
Putative conjugal transfer trbl transmembrane protein.
       0.493
limA
Probable limonene-1,2-epoxide hydrolase protein.
       0.471
trbE
Probable conjugal transfer protein trbe.
       0.469
RSc2579
Putative lipoprotein.
      
0.461
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.