STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2597Putative short-chain dehydrogenase/reductase sdr; oxidoreductase protein. (252 aa)    
Predicted Functional Partners:
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.681
RSp1422
Putative peptide synthetase protein.
 
 
 0.623
RSc2596
Putative amidase related to nicotinamidase; protein.
  
   0.603
RSc2598
Probable transcription regulator protein.
 
     0.594
RSc0284
Putative short-chain dehydrogenase/reductase sdr oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.501
RSc1806
Probable polyketide synthase protein.
 
 
 0.487
RSc2595
Conserved hypothetical protein with dimeric alpha-beta barrel.
  
    0.485
fruK
Probable 1-phosphofructokinase protein; Belongs to the carbohydrate kinase PfkB family.
   
    0.420
RSc2593
Putative carboxylesterase, type b; protein; Belongs to the type-B carboxylesterase/lipase family.
  
 0.407
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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