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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2601Putative type iv secretory pathway vird2 (relaxase)-related protein. (683 aa)    
Predicted Functional Partners:
traF
Probable conjugal transfer traf transmembrane protein.
     0.961
RSc2603
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
     0.961
RSc2604
Hypothetical ribbon-helix-helix protein.
     0.913
parA3
Putative partition protein.
     0.907
RSc2606
Probable replication initiation repa-like protein.
 
     0.848
traG
Probable plasmid conjugation trag transmembrane protein.
 
   
 0.844
trbE
Probable conjugal transfer protein trbe.
 
   
 0.829
RSc2607
Putative dna binding protein.
 
     0.829
trbG
Probable conjugal transfer lipoprotein trbg.
 
     0.808
trbJ
Probable conjugal transfer trbj signal peptide protein.
 
     0.808
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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