STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2609Probable lipoprotein. (197 aa)    
Predicted Functional Partners:
RSc2607
Putative dna binding protein.
 
     0.837
RSc2604
Hypothetical ribbon-helix-helix protein.
 
     0.817
traF
Probable conjugal transfer traf transmembrane protein.
 
     0.814
RSc2603
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.813
RSc2606
Probable replication initiation repa-like protein.
 
     0.805
RSc2601
Putative type iv secretory pathway vird2 (relaxase)-related protein.
 
     0.800
RSc2617
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.794
parA3
Putative partition protein.
 
     0.776
RSc2574
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.773
trbI
Probable conjugal transfer trbi transmembrane protein.
  
     0.761
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.