Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc2621Hypothetical protein of unknown function duf1016. (355 aa)    
Predicted Functional Partners:
int
Integrase-tyrosine recombinase protein; Belongs to the 'phage' integrase family.
 
     0.816
RSc3413
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.632
hipA
Putative hipa transcription regulator protein.
  
     0.598
RSp1253
Putative hipa protein related(fragment).
  
     0.546
RSp1254
Hypothetical hipa protein related(fragment).
  
     0.473
purM
Probable phosphoribosylformylglycinamidine cyclo-ligase (airs)(phosphoribosyl-aminoimidazole synthetase) (air synthase) protein.
       0.431
RSp1627
Hypothetical ribbon-helix-helix motif harboring protein.
  
     0.423
radC2
Probable dna repair radc-like protein; Belongs to the UPF0758 family.
       0.419
RSc0872
Hypothetical protein of unknown function duf172; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
     0.411
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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