STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc2631Probable transmembrane abc transporter protein. (235 aa)    
Predicted Functional Partners:
RSc2632
Probable atp-binding abc transporter protein.
  
  0.984
RSc2093
Probable abc-type tungstate transport system, permease component abc transporter protein.
 
  
 0.976
RSc2092
Putative transcription regulator protein.
 
    0.850
fdhD-2
Probable fdhd protein homolog; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
     0.766
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
  
    0.762
RSc2373
Probable formate dehydrogenase (large subunit) oxidoreductase protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.736
RSc2372
Probable formate dehydrogenase (iron-sulfur subunit) oxidoreductase protein.
 
   
 0.709
RSc2376
Putative ferredoxin protein.
 
   
 0.707
RSc2375
Putative cytoplasmic chaperone tord; protein.
 
    0.704
modA
Putative molybdate-binding periplasmic signal peptide protein.
 
   
 0.693
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.