STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2653Probable protease signal peptide protein. (543 aa)    
Predicted Functional Partners:
RSc2654
Probable serine protease protein; Belongs to the peptidase S8 family.
 
  
 
0.951
lon
Probable atp-dependent protease la protein; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
   
  
 0.612
RSc2652
Probable lipoprotein.
       0.456
tek2
Probable tek-related protein.
   
 
 0.453
tek
Tek signal peptide protein.
   
 
 0.453
RSp0116
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
 
 0.422
RSc3101
Putative serine protease protein.
 
 
 0.413
RSc2655
Probable transmembrane protein.
 
  
 0.412
RSp0641
Probable non ribosomal peptide synthetase protein.
     
 0.405
gspK
Probable general secretory pathway k transmembrane protein.
 
     0.403
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.