STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2654Probable serine protease protein; Belongs to the peptidase S8 family. (679 aa)    
Predicted Functional Partners:
RSc2653
Probable protease signal peptide protein.
 
  
 
0.951
lon
Probable atp-dependent protease la protein; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
   
  
 0.646
tek2
Probable tek-related protein.
   
 
 0.574
tek
Tek signal peptide protein.
   
 
 0.574
RSc1806
Probable polyketide synthase protein.
  
 0.490
RSp0641
Probable non ribosomal peptide synthetase protein.
    
 0.490
egl
Endoglucanase precursor (endo-1,4-beta-glucanase)(cellulase) protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
 0.438
RSp0116
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
 
 0.419
RSp0087
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
   
 0.407
RSp0086
Putative rhs-related protein.
 
    0.402
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.