STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glcDProbable glycolate oxidase (fad-linked subunit) oxidoreductase protein. (497 aa)    
Predicted Functional Partners:
glcE
Probable glycolate oxidase subunit oxidoreductase protein.
 
 0.996
glcF
Probable glycolate oxidase (iron-sulfur subunit) protein.
 
 0.995
RSc1611
Hypothetical protein of unknown function duf224.
  
 0.935
RSp0945
Probable dehydrogenase oxidoreductase protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 
 0.921
aceB
Probable malate synthase a (msa or masy protein); Belongs to the malate synthase family.
  
 
 0.917
katE
Probable catalase hydroperoxidase hpII oxidoreductase protein; Belongs to the catalase family.
   
 0.917
RSc1034
Hypothetical oxidoreductase protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 0.911
eda
Probable bifunctional alkh protein (khg/kdpg aldolase): 4-hydroxy-2-oxoglutarate aldolase and 2-dehydro-3-deoxyphosphogluconate aldolase.
   
 
 0.908
RSc0262
Probable d-isomer specific 2-hydroxyacid dehydrogenase, nad-binding; oxidoreductase protein.
  
 
 0.907
RSc1042
Putative phosphoglycolate phosphatase protein.
    
 0.906
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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