STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrgBPutative effector of murein hydrolase transmembrane protein. (240 aa)    
Predicted Functional Partners:
lrgA
Putative effector of murein hydrolase transmembrane protein.
 
  
 0.998
glcF
Probable glycolate oxidase (iron-sulfur subunit) protein.
       0.610
glcE
Probable glycolate oxidase subunit oxidoreductase protein.
       0.607
glcD
Probable glycolate oxidase (fad-linked subunit) oxidoreductase protein.
       0.595
RSc2734
Probable response regulator transcription regulator protein.
     
 0.579
RSc2066
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
  
 0.539
RSp0238
Probable pula pullulanase related glycosidase protein; Belongs to the glycosyl hydrolase 13 family.
     
 0.529
pilX
Probable type-4 fimbrial biogenesis transmembrane protein.
      
 0.520
RSc2671
Putative enzyme related to lactoylglutathione lyase protein.
       0.469
cls
Probable cardiolipin synthetase transmembrane protein; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.
 
   
 0.464
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.