STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
oxyRProbable hydrogen peroxide-inducible genes activator transcription regulator protein; Belongs to the LysR transcriptional regulatory family. (317 aa)    
Predicted Functional Partners:
RSc0160
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.750
RSc2497
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.717
katGb
Probable peroxidase/catalase (cata) oxidoreductase protein; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
      
 0.677
RSc1880
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.630
sodB
Probable superoxide dismutase [fe] protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
     
 0.584
RSc0325
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.573
RSp1237
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.564
katE
Probable catalase hydroperoxidase hpII oxidoreductase protein; Belongs to the catalase family.
     
 0.559
grxC
Probable glutaredoxin 3 (grx3) protein; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
      
 0.554
rpoS
Rna polymerase sigma s (sigma-38) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.
    
 
 0.537
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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