STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2693Putative outer membrane usher transmembrane protein. (754 aa)    
Predicted Functional Partners:
RSc2694
Putative pili assembly chaperone transmembrane protein.
 
 0.998
RSp1499
Putative pili assembly chaperone transmembrane protein.
 
 0.996
RSc2692
Probable signal peptide protein.
 
 
 0.995
RSc2695
Probable signal peptide protein.
 
 
 0.988
RSc2696
Probable signal peptide protein.
 
 
 0.986
RSp1497
Probable lipoprotein signal peptide.
 
 
 0.979
RSp1500
Probable signal peptide protein.
 
 
 0.979
RSp1498
Probable outer membrane usher signal peptide protein.
  
  
 
0.923
RSc2691
Hypothetical protein; Miscellaneous; unknown.
       0.576
trbE
Probable conjugal transfer protein trbe.
   
    0.478
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.