STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nudJPutative nudix hydrolase protein; Belongs to the Nudix hydrolase family. NudJ subfamily. (168 aa)    
Predicted Functional Partners:
trmU
Probable trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase protein; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.806
RSp0189
Probable type iv pilus assembly fimv-related transmembrane protein.
 
  
 0.573
RSc2722
Probable ipr002932 ferredoxin-dependent glutamate synthase; signal peptide protein; Belongs to the glutamate synthase family.
       0.543
pepP
Probable xaa-pro aminopeptidase (aminopeptidase p II) protein; Belongs to the peptidase M24B family.
 
   
 0.536
RSc0053
Hypothetical protein of unknown function duf484.
  
     0.531
pilZ
Putative type 4 fimbrial biogenesis protein.
  
     0.520
RSc1986
Probable type iv pilus assembly fimv-related transmembrane protein.
 
  
 0.516
RSc2657
Probable transmembrane protein.
  
     0.499
RSc2725
Putative transcription regulator protein.
       0.491
recX
Putative regulatory protein recx; Modulates RecA activity.; Belongs to the RecX family.
 
     0.488
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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