STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2734Probable response regulator transcription regulator protein. (345 aa)    
Predicted Functional Partners:
phcB
Regulatory protein.
  
  
 0.809
RSc2923
Putative transmembrane sensor histidine kinase transcription regulator protein.
 
   
 0.800
RSp0220
Probable two-component transmembrane sensor histidine kinase transcription regulator protein.
 
   
 0.766
repA
Probable repa replicase protein.
  
     0.755
pehS
Probable transmembrane sensor histidine kinase transcription regulator protein.
 
   
 0.703
RSp0611
Probable transmembrane protein.
  
     0.695
RSc3360
Hypothetical transmembrane protein.
  
     0.684
RSc2356
Probable bifunctional: uroporphyrin-III c-methyltransferase and uroporphyrinogen-III synthase transmembrane protein.
 
   
 0.672
RSc0176
Probable lipoprotein.
 
     0.671
RSc0724
Putative type-4 fimbrial biogenesis pily1-related signal peptide protein.
  
   
 0.671
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.