STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgoAbPutative galactonate dehydratase protein; Catalyzes the dehydration of D-galactonate to 2-keto-3-deoxy- D-galactonate. (382 aa)    
Predicted Functional Partners:
dgoK
Probable 2-dehydro-3-deoxygalactonokinase protein.
 
 
 0.989
dgoAa
Putative 2-dehydro-3-deoxyphosphogalactonate aldolase protein.
   
 0.976
RSc2755
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
   
 0.925
RSc2754
Probable ipr011013 galactose mutarotase-like protein.
 
    0.823
araF
Probable l-arabinose-binding periplasmic (pbp) abc transporter protein; Belongs to the bacterial solute-binding protein 2 family.
 
     0.817
RSc2753
Probable ipr002198 short-chain dehydrogenase/reductase oxidoreductase protein.
   
 0.808
araH
Probable l-arabinose transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
       0.759
araG
Probable l-arabinose atp-binding abc transporter protein; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.
       0.748
RSp0832
Probable gluconolactonase protein.
 
   
 0.527
tktA
Probable transketolase protein; Belongs to the transketolase family.
       0.511
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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